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Ahh, apologies... Was thinking of the clone Prusa's which seem to have the stepper motor on the front and the drive gear facing the back of the machine.

But my suggestion still stands if you are still having clearance issues between the motor and the board. I'm just uploading photos on the 'i made one' look for the yellow print with an 'X axis' label on the stepper, it will make sense then! (teaching the mrs to use the printer and she was getting confused with x,y,z)