I have now updated the files and will take this out of work in progress.
Update 1-4-2019: I noticed that I forgot to add the door pull part for this, which is the same as used in the medium bins with doors. I have now uploaded the door pull, the file is "MED-BOX-WITH-LID-4B-pull.stl".
I split this off my other thing (https://www.thingiverse.com/thing:3091544) which is a bunch of organizer dividers for the Stanley 014725R 25 compartment organizer. This is an insert for the large size bin, which provides 3 lidded compartments and 4 open bins for parts. I found I needed this when M3 nuts began to migrate to other places when I did a tip test using my divided bins. This part with the lids should print lid side down and has integrated supports so none should be necessary. The part with the open bins can print with the bottom side on the bed. Once done, remove the supports which close off the slots on each lid and insert the lid pulls (they should go in with the pull part towards the center of the box). The pulls have a dovetail and mine did not need any glue since they are a tight fit.
In order to make this part support free, it prints in 2 parts. Only thing to note is that the bin side has one slightly sloped side, install it like the pics and it will be cool. The open bin side should have the closed wall against the bins. I put some tape here as well between the parts.
I printed mine with 0.15 LH and 30% infill.
I used some 3m 468MP double sided tape around the top of the insert and near the bottom sides of the yellow bins to secure this in place. So after a test fit without tape, I applied the tape and pushed the insert in place rather swiftly, otherwise the tape will bind up on the sides.
I used the hinge from mathgrrl's customize-able thing, so it will print in one part.
If you just need the medium bin with lids see the model below:
Please post your makes if you like this.
Update 10/1/2018: Uploaded the STEP file for easy remixing.
Stanley 014725R organizer - medium 3 compartment bin with lids
Stanley 014725R organizer bin dividers